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Contents (Abstracts)
Volumes
11: 1 (1963)
27: 2 (1979)
31: 1 (1983)
35: 1 (1987)
36: 1 (1988)
40: 3-4 (1995)
42: 2 (1999)
43: 3 (2000)
44: 1-2 (2001)
45: 2 (2002)
46: 1 (2003)
47: 1 (2004)
47: 2 (2004)
48: 1 (2005)
48: 2 (2005)
49: 1 (2006)
49: 2 (2006)
50: 1 (2007)
50: 2 (2007)
51: 1 (2008)
51: 2 (2008)
52: 1 (2009)
52: 2 (2009)
53: 1 (2010)
53: 2 (2010)
54: 1 (2011)
54: 2 (2011)
55: 1 (2012)
55: 2 (2012)
56: 1 (2013)
56: 2 (2013)
57: 1 (2014)
57: 2 (2014)
58: 1 (2015)
58: 2 (2015)
59: 1 (2016)
59: 2 (2016)
60: 1 (2017)
60: 2 (2017)
61: 1 (2018)
61: 2 (2018)
62: 1 (2019)
62: 2 (2019)
63: 1 (2020)
63: 2 (2020)
64: 1 (2021)
64: 2 (2021)
65: 1 (2022)
65: 2 (2022)
Contents:
Volume 61, Nr. 2 (2018)
In silico investigation of extracellular domain of RAGE receptor interaction with A-box and B-box of HMGB1 protein
Safa Lotfi, Marzieh Dehghan Shahsaltane
Abstract
HMGB1 protein which is a non-histone chromosomal protein with two
functional domains named A-box and B-box can also act as a signaling molecule after
releasing from the cell and binding to the cell surface receptors such as RAGE. HMGB1
through its B-box domain binds to extracellular domain of RAGE and activates the
signaling pathways involved in various pathological conditions like sepsis and tumor
growth and metastasis. Interaction of recombinant HMGB1 A-box with RAGE antagonizes
the RAGE activation by HMGB1. In the present study, interaction of human
RAGE (hRAGE) extracellular domain (VC1C2) and B-box and A-box of human HMGB1
(hHMGB1) was investigated using a protein-protein docking software, HADDOCK.
The results obtained were analyzed by PyMOL and LigPlot softwares. The results show
B-box and A-box bind to different sites on the VC1 domain of RAGE and one of the
B-box binding points is a positively charged groove located on the V domain surface
which is also a major binding site for another RAGE ligand, Advanced Glycation End
products (AGEs). The obtained results can be utilized to design new potent drugs for
treatment of HMGB1-RAGE-related diseases such as cancer and sepsis.
Keywords
human HMGB1, human RAGE, HADDOCK software, cancer, sepsis |
Stress tolerance of three opportunistic black yeasts
Janja Zajc, Cene Gostinčar, Metka Lenassi, Nina Gunde-Cimerman
Abstract
Many species of black yeasts can survive extremely harsh conditions
and can quickly adapt to novel environments. These traits were proposed to have a
role in the ability of some fungal species to colonise indoor habitats inhospitable for
majority of microorganisms, and to cause (opportunistic) infections in humans. In order
to better understand the stress tolerance of black yeasts and thereby their opportunism,
we focused our research on the three model black yeasts: the polyextremotolerant
Aureobasidium
melanogenum
and
Exophiala dermatitidis
, and the extremely halotolerant
Hortaea werneckii.
These black yeasts are shown to thrive at temperatures, salinities,
pH values and, H
2
O
2
concentrations that inhibit growth of mesophilic species. Most
importantly, unlike their close relatives they can not only grow, but also synthesize
siderophores (
E. dermatitidis
) or degrade proteins (
A. melanogenum
) at 37 °C - traits
that are crucial for pathogenesis in humans. These results support the hypothesis that
the ability to cope with various environmental stresses is linked to the opportunistic
behaviour of fungi. Therefore, better understanding of the connections between the
stress-tolerant biology of black fungi and their ability to cause disease is needed, in particular
due to their changing interactions with humans and their emerging pathogenicity.
Keywords
melanised fungi, temperature, NaCl, pH tolerance, ROS, oligotrophism, proteolytic activity, capsule |
Combined use of chlorophyll a and phycocyanin fluorescence sensors for quantification and differentiation of phytoplankton:
a useful approach for small surface water bodies
Tinkara Rozina, Tina Eleršek, Maja Zupančič Justin, Andrej Meglič
Abstract
Sensors based on
in vivo
measurements of photosynthetic pigments
fluorescence enable real-time phytoplankton monitoring with high spatial and temporal
resolution. A combination of chlorophyll a (CHL) and phycocyanin (PC) fluorescence
sensors was used for phytoplankton quantification and differentiation in two small water
bodies, Koseze Pond and pond in Hotinja vas. The high correlation of CHL and PC
fluorescence signals with biovolume was confirmed during the two-year monitoring
in a natural pond environment in spite of a seasonal succession of the phytoplankton.
Additionally, disturbances of the sensors were investigated. Water bodies containing
predominantly algae yielded false positive signals of the PC sensor, which reached
up to 1% of the intensity of the CHL signal. Similarly, underestimated counts of
cyanobacteria measured with CHL fluorescence sensor can be adjusted using PC
fluorescence sensor.
Keywords
small water bodies, algae, cyanobacteria, fluorescence sensors, biovolume |
‘Only introduced’ or ‘invasive’: spread of the alga Aulacoseira ambigua f. japonica from Asia to Africa and Europe
Tina Eleršek
Abstract
Many non-native algal species are found in waters all over the world.
Many terms are used to describe such organisms that have expanded their distribution.
However, a unified model or concept remains to be defined, as how biological
‘invasions’ are seen depends on the perspective. Understanding invasive organisms
is important for biodiversity, science policy and water management. During monitoring
sampling at Slivniško Lake (Slovenia) in 2016, the curved diatom
Aulacoseira
ambigua
f.
japonica
Tuji & D.M. Williams was identified. This species originates
from Japan, from where it was described more than 100 years ago. The chronology
of the published distributions of
A. ambigua
f.
japonica
defines its spread from Japan
to Asia, then to western Russia and South Africa, and now to central Europe. This
study provides further evidence that
A. ambigua
f.
japonica
has become established
in Europe (Slovenia), as supported by light microscopy and scanning electron microscopy.
To the best of our knowledge, this is the first qualitative and quantitative
description of
A. ambigua
f.
japonica
in Europe. It has been suggested that the shape
of these algal colonies is significant for the interpretation of ecological information,
and indeed, also in the present case, spiral colonies were found in this eutrophic water
body. Although curved cells and colonies can also be interpreted as (sub)populations
or morphological variants, only detailed molecular studies can reveal if these also
have taxonomic significance.
Keywords
algae,
Aulacoseira ambigua
f.
japonica,
introduced species, invasive species, scanning electron microscopy |
The vascular flora of Kopački rit Nature Park (Croatia)
Vlatko Rožac, Dragan Prlić, Siniša Ozimec
Abstract
Kopački rit Nature Park is a large fluvial-marshy floodplain, situated in
the northeastern Croatia, between courses of the Danube and the Drava Rivers. Due
to exceptional biological and ecological values of this floodplain area in the middle
course of the Danube River, it had been protected since 1967; proclaimed as Nature
Park in 1999 and from 2012 is a part of the UNESCO Transboundary Biosphere
Reserve Mura-Drava-Danube. This paper lists a total of 522 vascular plant taxa, classified
in 295 genera and 96 families, recorded for Kopački rit Nature Park. The list is
completed according to checked literature records and data for 114 new taxa, found
during the floristic investigation carried out from 2010 to 2018. Taxonomic, ecological
and phytogeographical analyses are presented. Hemicryptophytes dominate (39.3%)
in the biological spectrum, followed by therophytes (23.8%), geophytes (12.6%) and
hydrophytes (12.5%). In the chorological spectrum, the most numerous are plants of
Eurasian floral elenent (32.8%), followed by Cosmopolites (27.4%), and European
floral element (10.7%). Out of 53 recorded allochthonous plants, 26 are invasive
alien plant species. According to protection and conservation status at the national
level, 55 taxa are listed in the Red Book of Vascular Plants of Croatia and 53 taxa
are strictly protected. One species,
Marsilea quadrifolia
, is listed in Annex II of the
Habitat Directive.
Keywords
Kopački rit, Danube, flora, biodiversity |
Elemental composition and fungal colonisation of decomposing Phragmites australis (Cav.) Trin. ex Steud. litter at different water regimes
Matevž Likar, Nataša Dolinar, Katarina Vogel-Mikuš, Alenka Gaberščik, Marjana Regvar
Abstract
Plant litter decomposition in intermittent dry and wet habitats sharedecomposition mechanisms of both dry land and submerged habitats. The aims of the present study were therefore to compare fungal communities on the decomposing plant material regarding the water regime of the location. Furthermore we wanted to evaluate the effects of the water regime on the decomposition in combination with fungal decomposers. Litter decomposition was followed on selected sites of Lake Cerknica with different hydrological regimes, using the litterbag method. The elemental composition of the decomposing plant tissues of
Phragmites australis
and
fungal communities developing on the decomposing plant material were analysed. The hydrological regime has an important role in defining the fungal community of
P. australis
leaf litter. Water regime affected the fungal communities, which exhibited higher diversity under more stable dry or submerged conditions (in contrast to intermittent). Decomposition rates were more affected by the environment as by the fungal community diversity or composition. But, despite differences in the fungal communities the elemental composition showed similar patterns of enrichment due to decreases in the organic fraction of the plant tissue.
Keywords
litter decomposition, fungal community, elemental composition, intermittent habitat, wetland |
Effect of selenium, iodine and their combination on development of Tartary buckwheat sprouts
Sara Gorše, Aleksandra Golob, Mateja Germ
Abstract
Tartary buckwheat (
Fagopyrum tataricum
Gaertn) is becoming more
and more popular due to its health benefits for humans. It contains important fibres,
vitamins, certain minerals and antioxidants as rutin. Sprouts are a hot trend in the food
production and nutrition. Enrichment of sprouts with iodine (I) and selenium (Se) may
prevent endemic deficiency of these elements for humans and animals. The aim of the
study was to found out the effect of selenate (Se(VI)), iodate (I(V)) and their combination
on morphological, physiological and biochemical properties of Tartary buckwheat
sprouts. Tartary seeds were soaked in solutions with Se(VI) (20 mg/L), I(V) (1500 mg/L)
or in Se(VI) + I(V) (20 mg/L Se(VI) + 1500 mg/L (I(V)). Experiment was performed
in growth chamber in two repetitions. Measurements were performed three weeks after
germination. The solution of iodate and combination of selenate and iodate lowered
germination rate of sprouts. There was no effect of the treatments on the amount of
chlorophyll
a
, anthocynins and UV absorbing compounds. The amount of rutin was the
highest in control sprouts. According to physiological measurements, control sprouts
and sprouts from treated seeds were not stressed by the treatments.
Keywords
Tartary buckwheat, sprouts, selenium, iodine |
Family Gammaridae (Crustacea: Amphipoda), mainly its
Echinogammarus clade in SW Europe. Further elucidation of its phylogeny and taxonomy
Boris Sket, Yhonge Hou
Abstract
Most parts of the
Echinogammarus
clade of Gammaridae have been
appropriately classified with the help of a molecular analysis, ultimately freed of the
Echinogammarus-Chaetogammarus
malediction. Among defining morphological characters,
the gnathopod interrelations are comparatively well congruent with molecular
markers. Genus
Homoeogammarus
distribution area extended from Mediterranean
to Atlantic islands.
Chaetogammarus
and
Trichogammarus
are firm members of the
morphologically very diversified Ponto-Caspian group genera, not closely related to
the morphologically similar
Echinogammarus, Marinogammarus
or
Homoeogammarus
.
Genus
Pectenogammarus
(along with
Neogammarus
and
Laurogammarus
)
synonymized with
Homoeogammarus
.
Parhomoeogammarus
diagnose corrected,
based on topotype samples of the type species. Freshwater species of the ‘European
Eulimnogammarus
’ in SW Europe defined as
Iberogammarus
gen. nov. Continental
Homoeogammarus
-like, but molecularly distinct group, defined as
Dinarogammarus
gen. nov. Some here accepted genera are molecularly well supported, some are morphologically
difficult to distinguish, but each one is morphologically homogeneous; they
are also geographically well defined. In both respects, the very speciose and widely
spread
Homoeogammarus
is different.
Keywords
Amphipoda, Gammaridae, systematics, molecular phylogeny, biogeography, new genera |
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